rs136380 chr22:30720766 C>T
- Sequence
aatgaatgcttaactaatgagacc[C/T]tcctgtttaactcccatattcctg
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- IKZF1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| IKZF1_HUMAN | -0.34 | 2.27 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP bipolar disorder in alcoholics, college completion, fasting insulin, homa-b, homa-ir, urinary albumin-to-creatinine ratio, waist circumference in controls, years of education
GTEx eQTL Adipose_Subcutaneous, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Mucosa, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Whole_Blood