rs1370905 chr18:26654546 A>C
- Sequence
aaatcttacagctagaagagagac[A/C]tctagtgtgtgttggagaacttta
- ASB in cell types
- GM19240 (B cells Lymphoblastoid Cell Lines) GM12878 (female B-cells lymphoblastoid cell line) GM02630 (Fanconi anemi) GM19239 (male B-cells lymphoblastoid cell line)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN SMC3_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.40 | 2.37 | 1.45 | 0.40 | Weak Concordant | |||
| STAG1_HUMAN | -1.90 | 2.29 | 1.00 | n/a | n/a | |||
| SMC3_HUMAN | -1.95 | 2.39 | 1.00 | n/a | n/a |
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Motif analysis
