rs138229 chr22:50118978 A>G

Sequence
caaggggctgtagggatgtaaccc[A/G]gaaaaggagcaggaaagtccctcg
ASB in cell types
HAEC (human aortic endothelial cells)
ASB for transcription factors
JUN_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
JUN_HUMAN n/a 2.55 1.000.03 2.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

EMBL-EBI behavioural disinhibition (generation interaction)
GRASP eye color,  maternal transmission distortion,  schizophrenia,  total cholesterol
GTEx eQTL Adipose_Subcutaneous,  Artery_Aorta,  Brain_Caudate_basal_ganglia,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Muscle_Skeletal,  Nerve_Tibial,  Pituitary,  Skin_Sun_Exposed_Lower_leg,  Testis,  Thyroid,  Whole_Blood

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