rs1383116 chr12:26125146 C>A
- Sequence
cgggggaggaggggccgggccggg[C/A]gggggcgtcgggagaaggcggcga
- ASB in cell types
- GBM39 (Human brain tumor) GM02630 (Fanconi anemi)
- ASB for transcription factors
- CTCF_HUMAN SMC3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | -0.54 | 1.98 | 1.13 | 4.28 | Concordant | |||
| SMC3_HUMAN | -0.81 | 1.49 | 1.00 | n/a | n/a |
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Motif analysis
