ADASTRA v5.1.3
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Bill Cipher
. You can switch to the latest ADASTRA version:
adastra.autosome.org
rs139562
chr22:41800680
G
>
C
Sequence
gctagccgtttgctcccgctttca[G/C]ttgctttgctgttagcctgttgga
ASB in cell types
HEK293 (embryonic kidney)
keratinocytes
GM10847 (female B-cells Lymphoblastoid Cell Lines)
breast tumor
ASB for transcription factors
SNAI2_HUMAN
ESR1_HUMAN
STAG1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe
0.05
FDR threshold
0
ES threshold
Color scale
-log10 FDR of Ref (
G
) ASB
-log10 FDR of Alt (
C
) ASB
Details
Transcription factors
Cell types
Effect size Ref
(+6 others)
Selected columns
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Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
SNAI2_HUMAN
-4.32
2.55
1.00
1.4·10
-3
1.50
n/a
No Hit
ESR1_HUMAN
2.67
n/a
0.02
1.00
3.00
n/a
No Hit
STAG1_HUMAN
0.44
2.08
1.00
0.05
1.00
n/a
n/a
Items per page:
5
1 – 3 of 3
Motif analysis
No data available
Genetic associations
GRASP
birth weight
,
fasting blood glucose
,
height
,
serum creatinine
GTEx eQTL
Adipose_Subcutaneous
,
Adipose_Visceral_Omentum
,
Adrenal_Gland
,
Artery_Aorta
,
Artery_Coronary
,
Artery_Tibial
,
Brain_Amygdala
,
Brain_Anterior_cingulate_cortex_BA24
,
Brain_Caudate_basal_ganglia
,
Brain_Cerebellar_Hemisphere
,
Brain_Cerebellum
,
Brain_Cortex
,
Brain_Frontal_Cortex_BA9
,
Brain_Hippocampus
,
Brain_Hypothalamus
,
Brain_Nucleus_accumbens_basal_ganglia
,
Brain_Putamen_basal_ganglia
,
Brain_Spinal_cord_cervical_c-1
,
Breast_Mammary_Tissue
,
Cells_Cultured_fibroblasts
,
Cells_EBV-transformed_lymphocytes
,
Colon_Sigmoid
,
Colon_Transverse
,
Esophagus_Gastroesophageal_Junction
,
Esophagus_Mucosa
,
Esophagus_Muscularis
,
Heart_Atrial_Appendage
,
Heart_Left_Ventricle
,
Liver
,
Lung
,
Muscle_Skeletal
,
Nerve_Tibial
,
Ovary
,
Pancreas
,
Pituitary
,
Prostate
,
Skin_Not_Sun_Exposed_Suprapubic
,
Skin_Sun_Exposed_Lower_leg
,
Small_Intestine_Terminal_Ileum
,
Spleen
,
Stomach
,
Testis
,
Thyroid
,
Uterus
,
Whole_Blood
Download
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Generated by ADASTRA database
2022.05.19 v5.1.3 Bill Cipher
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SNP set annotation with ANANASTRA
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+/-100bp
log2-scale
log2(Alt/Ref motif p-value)