rs13969 chr20:46014194 A>C
- Sequence
gcgtctggacaagctgggcctggg[A/C]gccgacgtggcccaggtgaccggg
- ASB in cell types
- GBM39 (Human brain tumor) keratinocytes MCF7L-P(immortalized breast epithelial cell line) GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- SNAI2_HUMAN TRI22_HUMAN SMC3_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SNAI2_HUMAN | n/a | 3.40 | 1.50 | n/a | No Hit | |||
| TRI22_HUMAN | 2.33 | -2.17 | 1.00 | n/a | n/a | |||
| SMC3_HUMAN | 0.86 | 2.47 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Stomach, Testis, Thyroid, Whole_Blood