rs139990 chr22:36462243 A>T
- Sequence
gctccgttggctgccacagaggta[A/T]gcgtgagagtgcgctcagaagtgg
- ASB in cell types
- BEAS-2B (bronchial epithelium) MCF7 TamR (invasive ductal breast carcinoma Tamoxifen resistant) HUVEC-C (HUVEC, umbilical vein endothelial cells)
- ASB for transcription factors
- GCR_HUMAN TF65_HUMAN GRHL2_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GCR_HUMAN | 0.02 | 1.23 | 1.42 | n/a | No Hit | |||
| TF65_HUMAN | 1.77 | -4.84 | 2.50 | n/a | No Hit | |||
| GRHL2_HUMAN | -0.54 | 1.80 | 1.88 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cortex, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood