rs1400645 chr2:168166471 G>A

Sequence
tttcccttcccaaatgcaacaata[G/A]gatgacaatagtgccatttctgat
ASB in cell types
CD14+ monocytes monocyte-derived macrophages from peripheral blood
ASB for transcription factors
STAT1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
STAT1_HUMAN 2.86 -5.08 1.2·10-31.00 2.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP diastolic blood pressure (dbp),  obesity with early age of onset (age >2),  systolic blood pressure (sbp),  total cholesterol
GTEx eQTL Colon_Transverse,  Esophagus_Mucosa,  Heart_Left_Ventricle,  Nerve_Tibial,  Pancreas

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