rs1408103 chr9:83219702 A>T
- Sequence
atggtaaaagaatttgcaccccaa[A/T]atcctccccagcggctctgaaatg
- ASB in cell types
- GM18486 (Lymphoblastoid Cell Lines) MCF7 (Invasive ductal breast carcinoma) LNCaP (prostate carcinoma) glioblastoma patient-derived cell model
- ASB for transcription factors
- CTCF_HUMAN ESR1_HUMAN RAD21_HUMAN CHD8_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.44 | 0.93 | 2.39 | n/a | No Hit | |||
| ESR1_HUMAN | 2.17 | 0.20 | 1.88 | n/a | No Hit | |||
| RAD21_HUMAN | 2.25 | -0.37 | 2.58 | n/a | n/a | |||
| CHD8_HUMAN | 1.92 | -2.06 | 1.00 | n/a | n/a |
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