rs141339319 chr5:180072103 T>C
- Sequence
agggtcagcggaacacaaagtccc[T/C]ctcgcgcggctgccgcctgaggcg
- ASB in cell types
- U87 (glioblastoma) MDA-MB-453 (breast adenocarcinoma) breast tumor 22RV1 (prostate carcinoma)
- ASB for transcription factors
- ANDR_HUMAN BRD3_HUMAN PRGR_HUMAN ESR1_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 2.46 | -0.67 | 2.12 | n/a | No Hit | |||
| BRD3_HUMAN | 3.32 | n/a | 1.00 | n/a | n/a | |||
| PRGR_HUMAN | 2.90 | -0.24 | 2.00 | n/a | No Hit | |||
| ESR1_HUMAN | 2.81 | n/a | 3.00 | n/a | No Hit | |||
| BRD4_HUMAN | 1.50 | -1.56 | 3.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Thyroid