rs14157 chr11:66002309 T>G
- Sequence
ctggaggcctatctccctcagaac[T/G]gcgcgagaagcgagaccttagaag
- ASB in cell types
- K562 (myelogenous leukemia) GM12878 (female B-cells lymphoblastoid cell line) HepG2 (hepatoblastoma) HL-60 (acute myeloid leukemia)
- ASB for transcription factors
- EGR1_HUMAN CHD2_HUMAN IRF5_HUMAN STAT1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| EGR1_HUMAN | 2.79 | -0.07 | 1.40 | n/a | No Hit | |||
| CHD2_HUMAN | 3.04 | -2.50 | 1.67 | n/a | n/a | |||
| IRF5_HUMAN | -3.31 | 3.17 | 1.00 | n/a | n/a | |||
| STAT1_HUMAN | 1.68 | -1.40 | 2.00 | n/a | No Hit | |||
| NFXL1_HUMAN | -0.16 | 2.88 | 1.50 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Whole_Blood