rs14180 chr17:51260896 C>T
- Sequence
cggcgacgtcgagaacgacgagga[C/T]gcgttgctgcggcgtctgcgaggc
- ASB in cell types
- HepG2 (hepatoblastoma) 22RV1 (prostate carcinoma) primary B-CLL cells breast tumor
- ASB for transcription factors
- ANDR_HUMAN BRD4_HUMAN ESR1_HUMAN RFOX2_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 2.84 | 0.39 | 1.67 | n/a | No Hit | |||
| BRD4_HUMAN | 2.44 | -0.53 | 2.17 | n/a | n/a | |||
| ESR1_HUMAN | 2.40 | -1.31 | 2.00 | n/a | No Hit | |||
| RFOX2_HUMAN | 1.36 | -3.99 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Spleen, Stomach, Testis, Thyroid