rs142054071 chr16:70383054 T>C
- Sequence
gtgtctcctgaatcgtgtggcacc[T/C]gctagggtcaggcatctcggcaga
- ASB in cell types
- keratinocytes
- ASB for transcription factors
- SNAI2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SNAI2_HUMAN | 2.65 | n/a | 1.00 | -5.66 | Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Breast_Mammary_Tissue, Esophagus_Mucosa, Muscle_Skeletal, Skin_Sun_Exposed_Lower_leg