rs142269893 chr7:105522182 T>G
- Sequence
agggcggccaggcaaaagcagcgc[T/G]ttccgcgcggaggaccagatgcgc
- ASB in cell types
- K562 (myelogenous leukemia) breast tumor primary B-CLL cells CD14+ monocytes
- ASB for transcription factors
- RFOX2_HUMAN ESR1_HUMAN ILF3_HUMAN STAT1_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RFOX2_HUMAN | 1.90 | -3.09 | 1.75 | n/a | n/a | |||
| ESR1_HUMAN | 1.64 | -0.04 | 1.62 | n/a | No Hit | |||
| ILF3_HUMAN | 1.61 | -1.56 | 1.25 | n/a | n/a | |||
| STAT1_HUMAN | 1.83 | -0.37 | 3.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adrenal_Gland, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Lung, Muscle_Skeletal, Nerve_Tibial, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid