rs142278621 chr16:88046191 C>T
- Sequence
tgcggcccttagagcctcctgacg[C/T]ggaggtgggcctttcacttctgcc
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) ICN12 (primary pre-B acute lymphomablastic leukemia) primary B-CLL cells
- ASB for transcription factors
- IKZF2_HUMAN TFE2_HUMAN BRD4_HUMAN ELF1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| IKZF2_HUMAN | 1.17 | -0.83 | 1.00 | n/a | n/a | |||
| TFE2_HUMAN | 2.73 | n/a | 1.33 | n/a | No Hit | |||
| BRD4_HUMAN | 1.87 | -1.05 | 3.00 | n/a | n/a | |||
| ELF1_HUMAN | 1.36 | -1.36 | 1.00 | -3.24 | Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Artery_Aorta, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Colon_Sigmoid, Nerve_Tibial, Pituitary, Prostate, Stomach, Testis, Thyroid