rs14236 chr13:20489385 A>G
- Sequence
ttcactcacctgaatgtgcatggc[A/G]ccctctactgcttcttggatattg
- ASB in cell types
- HCT-116 (colon carcinoma) WA01 (H1, human embryonic stem cells) MOLM-13(acute monocytic leukemia(AML), Homo sapiens) LNCaP (prostate carcinoma)
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN SNAI2_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.35 | 2.10 | 3.32 | 3.30 | Concordant | |||
| RAD21_HUMAN | 0.17 | 2.57 | 2.75 | n/a | n/a | |||
| SNAI2_HUMAN | n/a | 2.67 | 1.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Putamen_basal_ganglia, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Heart_Atrial_Appendage, Heart_Left_Ventricle, Minor_Salivary_Gland, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood