rs142559337 chr19:4556149 G>A
- Sequence
gtgggcgtggtcatggtgatgggc[G/A]tggccagaacctgagttgtgtggg
- ASB in cell types
- K562 (myelogenous leukemia)
- ASB for transcription factors
- EGR1_HUMAN PKNX1_HUMAN SP1_HUMAN NRF1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| EGR1_HUMAN | 2.22 | n/a | 2.00 | -3.20 | Concordant | |||
| PKNX1_HUMAN | 2.84 | n/a | 2.00 | 1.32 | Weak Discordant | |||
| SP1_HUMAN | 3.41 | n/a | 2.00 | -4.51 | Concordant | |||
| NRF1_HUMAN | 2.98 | -5.49 | 2.00 | 1.82 | Weak Discordant | |||
| MNT_HUMAN | 2.43 | -0.47 | 2.00 | n/a | n/a |
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Motif analysis
