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rs14408 chr11:308314 T>C

Sequence
tgccccacaaccctgctcccccga[T/C]gtccaccgtgatccacatccgcag
ASB in cell types
GM12878 (female B-cells lymphoblastoid cell line)
ASB for transcription factors
CTCF_HUMAN FOXK2_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 1.06 0.54 2.2·10-31.00 1.41 n/a No Hit
FOXK2_HUMAN 2.94 0.54 5.1·10-31.00 2.00 n/a n/a
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Motif analysis

No data available

Genetic associations

EMBL-EBI granulocyte count lymphocyte percentage of white cells myeloid white cell count neutrophil count sum basophil neutrophil counts sum neutrophil eosinophil counts
GRASP hdl cholesterol infant head circumference serum creatinine
GTEx eQTL Adipose_Subcutaneous Adipose_Visceral_Omentum Artery_Aorta Artery_Tibial Brain_Caudate_basal_ganglia Brain_Cerebellar_Hemisphere Brain_Cerebellum Brain_Cortex Brain_Hippocampus Brain_Hypothalamus Brain_Nucleus_accumbens_basal_ganglia Brain_Putamen_basal_ganglia Brain_Spinal_cord_cervical_c-1 Breast_Mammary_Tissue Cells_Cultured_fibroblasts Cells_EBV-transformed_lymphocytes Colon_Sigmoid Colon_Transverse Esophagus_Gastroesophageal_Junction Esophagus_Mucosa Esophagus_Muscularis Heart_Atrial_Appendage Lung Muscle_Skeletal Nerve_Tibial Ovary Pancreas Pituitary Prostate Skin_Not_Sun_Exposed_Suprapubic Skin_Sun_Exposed_Lower_leg Spleen Testis Thyroid Whole_Blood

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