rs145242377 chr10:14991506 G>A
- Sequence
gggagcactgatgcccagaagggg[G/A]cagatgctgcttttcgagcctctg
- ASB in cell types
- GM18526 (B – cells Lymphoblastoid Cell Lines) LNCaP C4-2B (prostate carcinoma) Detroit 562 (Pharyngeal squamous cell carcinoma)
- ASB for transcription factors
- CTCF_HUMAN TF65_HUMAN STAG1_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.72 | -1.59 | 3.00 | -3.06 | Concordant | |||
| TF65_HUMAN | 2.54 | -2.58 | 1.00 | n/a | No Hit | |||
| STAG1_HUMAN | 2.40 | n/a | 3.25 | n/a | n/a |
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Motif analysis
