rs1453559 chr17:39864166 T>C
- Sequence
ggctggagctgccgctgtggctac[T/C]cggcctctccacgtgctcctgccg
- ASB in cell types
- P493-6 (B-cell lymphoma) GM12878 (female B-cells lymphoblastoid cell line) WA01 (H1, human embryonic stem cells) LNCaP C4-2B (prostate carcinoma)
- ASB for transcription factors
- RAD21_HUMAN ZFX_HUMAN MAX_HUMAN REL_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RAD21_HUMAN | 0.48 | 1.42 | 1.54 | n/a | n/a | |||
| ZFX_HUMAN | 1.97 | -0.10 | 1.00 | -0.23 | Weak Concordant | |||
| MAX_HUMAN | 1.25 | -0.11 | 1.64 | n/a | No Hit | |||
| REL_HUMAN | -2.45 | 2.39 | 1.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Cortex, Brain_Frontal_Cortex_BA9, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Whole_Blood