rs146085815 chr7:105522115 G>C

Sequence
cgaggtggccagcgctctggttgg[G/C]acgcaagagagcggcgaaggccac
ASB in cell types
K562 (myelogenous leukemia) 22RV1 (prostate carcinoma) primary B-CLL cells
ASB for transcription factors
ANDR_HUMAN ILF3_HUMAN BRD4_HUMAN GMEB1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ANDR_HUMAN 2.82 -5.36 1.1·10-31.00 3.50 n/a No Hit
ILF3_HUMAN 2.03 -2.01 4.5·10-31.00 1.25 n/a n/a
BRD4_HUMAN 1.31 -0.32 0.041.00 1.55 n/a n/a
GMEB1_HUMAN 1.76 -2.99 0.051.00 1.50 n/a n/a
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adrenal_Gland,  Artery_Tibial,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Esophagus_Gastroesophageal_Junction,  Esophagus_Muscularis,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Pituitary,  Prostate,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Thyroid

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