rs147295 chr5:95883557 T>C
- Sequence
tcctagacagacgtgaagttctta[T/C]tgtccatctacaaatgctcacatt
- ASB in cell types
- BEAS-2B (bronchial epithelium)
- ASB for transcription factors
- GCR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GCR_HUMAN | 1.41 | -0.10 | 2.00 | 1.13 | Weak Discordant |
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Motif analysis
Genetic associations
GRASP 2 hour glucose, irritible bowel syndrome, longevity (exceptional longevity), premature ovarian failure, type 1 diabetes, combined control dataset