rs149476 chr5:168579695 T>G

Sequence
ctgctggggattgtagttctccgg[T/G]tcgtgaggccccgctctctggctg
ASB in cell types
K562 (myelogenous leukemia) monocytes from periferal blood HepG2 (hepatoblastoma) breast tumor
ASB for transcription factors
TYY1_HUMAN RBM25_HUMAN SNAI2_HUMAN JUN_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
TYY1_HUMAN -0.11 2.87 1.008.4·10-8 1.50 n/a No Hit
RBM25_HUMAN 0.11 2.37 1.008.5·10-6 1.50 n/a n/a
SNAI2_HUMAN -4.57 2.60 1.008.5·10-3 1.50 n/a No Hit
JUN_HUMAN 0.52 1.65 1.008.8·10-3 1.93 n/a No Hit
VEZF1_HUMAN 1.26 -3.64 0.021.00 2.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP fasting insulin,  homa-ir,  ldl cholesterol change with statins
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Adrenal_Gland,  Artery_Aorta,  Artery_Coronary,  Artery_Tibial,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Left_Ventricle,  Liver,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Prostate,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Testis,  Thyroid

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