rs1499788 chr3:157618223 G>A
- Sequence
ttgctatgattgatgcaggcatta[G/A]tcattaaaaaaaaaaaaaaaaaaa
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) thyroid gland HEK293T (embryonic kidney) gastroesophageal sphincter
- ASB for transcription factors
- FOS_HUMAN CTCF_HUMAN STAG1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOS_HUMAN | 3.44 | n/a | 1.00 | n/a | n/a | |||
| CTCF_HUMAN | 1.31 | 0.83 | 1.18 | n/a | No Hit | |||
| STAG1_HUMAN | 1.65 | -1.16 | 1.00 | n/a | n/a |
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