rs150541513 chr15:77633615 G>A
- Sequence
cagcctggcttcctgtccagcaga[G/A]ggcggcaggcctctctggcccgct
- ASB in cell types
- HeLa (cervical adenocarcinoma) KB (cervical adenocarcinoma) HUVEC-C (HUVEC, umbilical vein endothelial cells) HeLa S3 (cervical adenocarcinoma)
- ASB for transcription factors
- CTCF_HUMAN SMC3_HUMAN RAD21_HUMAN CENPA_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.79 | -0.40 | 1.94 | -5.28 | Concordant | |||
| SMC3_HUMAN | 2.21 | -0.31 | 1.83 | n/a | n/a | |||
| RAD21_HUMAN | 1.80 | 0.04 | 2.67 | n/a | n/a | |||
| CENPA_HUMAN | 2.47 | -2.13 | 1.00 | n/a | n/a |
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Motif analysis
