rs151202 chr5:55233776 G>A
- Sequence
cgcgtcgcctccgcggcccgccgg[G/A]gggagggggagctgcagcgcgcgc
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) iPS-derived dermal fibroblasts Ishikawa (endometrial adenocarcinoma) HCT-116 (colon carcinoma)
- ASB for transcription factors
- RARA_HUMAN HES1_HUMAN ESR1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RARA_HUMAN | 1.65 | 0.18 | 1.00 | n/a | No Hit | |||
| HES1_HUMAN | 2.98 | -5.32 | 2.00 | n/a | n/a | |||
| ESR1_HUMAN | 1.39 | 0.62 | 1.64 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cortex, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Liver, Minor_Salivary_Gland, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid