rs1519468 chr9:109100749 T>C

Sequence
agtatcttcatctgtaaatgaaga[T/C]accatctatcttacaaagatttat
ASB in cell types
LNCaP (prostate carcinoma) LNCaP95 22RV1 (prostate carcinoma) CWR22 (prostate carcinoma)
ASB for transcription factors
ANDR_HUMAN FOXA1_HUMAN HXB13_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ANDR_HUMAN 1.29 -0.04 7.9·10-121.00 1.52 n/a No Hit
FOXA1_HUMAN 1.24 -0.18 1.6·10-101.00 1.57 n/a No Hit
HXB13_HUMAN 1.68 -0.34 4.2·10-31.00 1.62 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP diastolic blood pressure (dbp),  systolic blood pressure (sbp),  triglycerides,  waist hip ratio
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Coronary,  Artery_Tibial,  Brain_Caudate_basal_ganglia,  Brain_Cerebellum,  Brain_Cortex,  Brain_Nucleus_accumbens_basal_ganglia,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Liver,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Pancreas,  Prostate,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Stomach,  Testis,  Thyroid,  Uterus,  Vagina,  Whole_Blood

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