rs1529505 chr5:76819138 C>T
- Sequence
gtggagctctgagtttcgaatcgg[C/T]ggcggcggattccccgcgcgcccg
- ASB in cell types
- keratinocytes SMMC-7721 (hepatocellular carcinoma) HT1080 (fibrosarcoma)
- ASB for transcription factors
- SNAI2_HUMAN SSRP1_HUMAN CATA_HUMAN JUN_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SNAI2_HUMAN | n/a | 3.46 | 1.50 | n/a | No Hit | |||
| SSRP1_HUMAN | 2.15 | -0.30 | 1.00 | n/a | n/a | |||
| CATA_HUMAN | n/a | 2.54 | 2.00 | n/a | n/a | |||
| JUN_HUMAN | 1.86 | -0.04 | 2.00 | n/a | No Hit |
Items per page:
1 – 4 of 4
Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Prostate, Spleen, Stomach, Thyroid, Whole_Blood