rs15359 chr17:43766611 C>G
- Sequence
ggtggaaggcagcgccacctgctg[C/G]ccatcatattatggctcacatacc
- ASB in cell types
- THP-1 (acute monocytic leukemia) T47D (invasive ductal carcinoma) glioblastoma patient-derived cell model GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN STAG1_HUMAN TRI22_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.29 | 1.46 | 1.35 | 7.32 | Concordant | |||
| RAD21_HUMAN | -0.05 | 1.01 | 1.54 | n/a | n/a | |||
| STAG1_HUMAN | 0.17 | 1.18 | 1.46 | n/a | n/a | |||
| TRI22_HUMAN | 0.14 | 3.05 | 1.00 | n/a | n/a | |||
| SMC3_HUMAN | -0.41 | 1.48 | 1.79 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Brain_Cerebellum, Brain_Cortex, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Heart_Left_Ventricle, Muscle_Skeletal, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood