rs1536165 chr1:83999390 C>A
- Sequence
ctttcccgggccacacacaccccc[C/A]ccccgtttgccttggtcccgctcg
- ASB in cell types
- neural cell GM12878 (female B-cells lymphoblastoid cell line) hTERT-HME1(Telomerase immortalized cell line) LNCaP (prostate carcinoma)
- ASB for transcription factors
- MXI1_HUMAN BRCA2_HUMAN E2F1_HUMAN EP300_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| MXI1_HUMAN | -2.99 | 3.23 | 1.00 | -1.44 | Weak Discordant | |||
| BRCA2_HUMAN | -0.65 | 0.76 | 1.00 | n/a | n/a | |||
| E2F1_HUMAN | -0.52 | 1.90 | 1.17 | n/a | No Hit | |||
| EP300_HUMAN | -0.82 | 1.64 | 1.17 | n/a | n/a |
Items per page:
1 – 4 of 4
Motif analysis
