rs1541702 chr16:11351695 T>C

Sequence
aatatcaaaggagttagattgtgt[T/C]ctgacatggttgtagactttcacc
ASB in cell types
22RV1 (prostate carcinoma)
ASB for transcription factors
ANDR_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ANDR_HUMAN 2.68 n/a 3.6·10-31.00 2.00 -1.34 Weak Concordant
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Motif analysis

ANDR_HUMAN Weak Concordant
ANDR_HUMAN pic

Genetic associations

GRASP aortic valve calcium,  total cholesterol,  urinary albumin-to-creatinine ratio
GTEx eQTL Artery_Tibial,  Brain_Caudate_basal_ganglia,  Brain_Hippocampus,  Brain_Putamen_basal_ganglia,  Cells_Cultured_fibroblasts,  Cells_EBV-transformed_lymphocytes,  Colon_Sigmoid,  Esophagus_Mucosa,  Esophagus_Muscularis,  Muscle_Skeletal,  Nerve_Tibial,  Pituitary,  Prostate,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Testis,  Thyroid,  Whole_Blood

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