rs154569 chr5:90558508 A>G
- Sequence
cattgggacgcccaggcagaggca[A/G]gactcgcgcgctcctaagccgagg
- ASB in cell types
- K562 (myelogenous leukemia) MCF7 (Invasive ductal breast carcinoma) WA01 (H1, human embryonic stem cells) Kelly (neuroblastoma)
- ASB for transcription factors
- NONO_HUMAN NRF1_HUMAN MYCN_HUMAN EP300_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| NONO_HUMAN | n/a | 4.03 | 2.00 | n/a | n/a | |||
| NRF1_HUMAN | n/a | 3.27 | 3.00 | n/a | No Hit | |||
| MYCN_HUMAN | -1.79 | 1.86 | 1.00 | 0.56 | Weak Concordant | |||
| EP300_HUMAN | -2.22 | 2.19 | 1.00 | n/a | n/a | |||
| NFIC_HUMAN | -1.79 | 2.73 | 2.00 | n/a | No Hit |
Items per page:
1 – 5 of 5
Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Colon_Transverse, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Pancreas, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Whole_Blood