rs154653 chr16:2136356 A>G

Sequence
ccgcggtgtggatccttctcccgc[A/G]atctccgtgcgcggcccgagtcag
ASB in cell types
K562 (myelogenous leukemia) CTV-1 (Adult T acute lymphoblastic leukemia) tibial nerve neural cell
ASB for transcription factors
EGR1_HUMAN NFIC_HUMAN SMCA4_HUMAN EP300_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
EGR1_HUMAN 2.00 n/a 1.3·10-71.00 2.00 n/a No Hit
NFIC_HUMAN 2.60 n/a 1.2·10-61.00 2.00 n/a No Hit
SMCA4_HUMAN 1.89 0.40 1.3·10-51.00 1.22 n/a n/a
EP300_HUMAN -4.50 3.03 1.001.2·10-3 1.33 n/a n/a
ILF3_HUMAN 2.48 -4.84 1.3·10-31.00 2.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Tibial,  Cells_Cultured_fibroblasts,  Esophagus_Muscularis,  Heart_Left_Ventricle,  Lung,  Nerve_Tibial,  Pituitary,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Thyroid

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