rs1546854 chr6:166382945 C>A
- Sequence
cgcttcccagagccaatgacaccc[C/A]ggccaaccccccggcagccgacgg
- ASB in cell types
- HepG2 (hepatoblastoma) K562 (myelogenous leukemia) adult erythroblasts
- ASB for transcription factors
- TYY1_HUMAN RBBP5_HUMAN E4F1_HUMAN FOXK2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TYY1_HUMAN | 2.40 | -0.53 | 2.62 | n/a | No Hit | |||
| RBBP5_HUMAN | -0.44 | 3.04 | 1.50 | n/a | n/a | |||
| E4F1_HUMAN | -0.30 | 0.40 | 1.00 | n/a | n/a | |||
| FOXK2_HUMAN | -3.61 | 3.20 | 1.00 | n/a | n/a | |||
| RBM25_HUMAN | 1.01 | 0.45 | 2.60 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP advanced age-related macular degeneration (geographic atrophy), body mass index (bmi), paternal transmission distortion, transmission distortion
GTEx eQTL Adipose_Subcutaneous, Brain_Spinal_cord_cervical_c-1, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Mucosa, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood