rs1549721 chr2:43168998 T>C
- Sequence
tgtcccacaccctgctcatttttt[T/C]tttctctctctctctctctctctc
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) LHSAR (prostate epithelial cells) MS-1 (Small cell lung carcinoma) GM19239 (male B-cells lymphoblastoid cell line)
- ASB for transcription factors
- CTCF_HUMAN IKZF2_HUMAN STAG1_HUMAN RELB_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.09 | -0.47 | 1.00 | n/a | No Hit | |||
| IKZF2_HUMAN | 2.49 | -3.68 | 1.50 | n/a | n/a | |||
| STAG1_HUMAN | 2.03 | -0.66 | 1.00 | n/a | n/a | |||
| RELB_HUMAN | 3.14 | -3.13 | 1.00 | n/a | No Hit | |||
| TRI22_HUMAN | 2.82 | n/a | 1.00 | n/a | n/a |
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Motif analysis
