rs155452 chr5:39260388 G>C
- Sequence
gagttcaatagctgtgacagatgt[G/C]agagggcctgcaaagcctaaaaca
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) K562 (myelogenous leukemia)
- ASB for transcription factors
- ZBT40_HUMAN MTG16_HUMAN ARI1B_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZBT40_HUMAN | 3.19 | n/a | 1.00 | n/a | n/a | |||
| MTG16_HUMAN | -2.34 | 2.45 | 1.00 | n/a | n/a | |||
| ARI1B_HUMAN | -2.06 | 2.44 | 1.00 | n/a | n/a |
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