rs1574538 chr20:2236387 A>C

Sequence
tctatggaatatagttgttgataa[A/C]ttgcacgaacttagctccattctc
ASB in cell types
22RV1 (prostate carcinoma) primary T-helper 1 CD4+ cells
ASB for transcription factors
ANDR_HUMAN SNAI1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ANDR_HUMAN n/a 3.23 1.001.4·10-3 2.00 n/a No Hit
SNAI1_HUMAN n/a 2.19 1.000.02 1.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP adiponectin levels,  birth weight,  obesity with early age of onset (age >2),  refractive error,  triglycerides

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