rs1574538 chr20:2236387 A>C
- Sequence
tctatggaatatagttgttgataa[A/C]ttgcacgaacttagctccattctc
- ASB in cell types
- 22RV1 (prostate carcinoma) primary T-helper 1 CD4+ cells
- ASB for transcription factors
- ANDR_HUMAN SNAI1_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | n/a | 3.23 | 2.00 | n/a | No Hit | |||
| SNAI1_HUMAN | n/a | 2.19 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP adiponectin levels, birth weight, obesity with early age of onset (age >2), refractive error, triglycerides