rs15842 chr1:1013541 T>C
- Sequence
ctcatctttgccagtacaggagct[T/C]gtgccgtggcccacagcccacagc
- ASB in cell types
- HEK293 (embryonic kidney) MOLT-4 (Adult T acute lymphoblastic leukemia) BEAS-2B (bronchial epithelium) CTV-1 (Adult T acute lymphoblastic leukemia)
- ASB for transcription factors
- ZBT26_HUMAN GCR_HUMAN ZFHX2_HUMAN CDK9_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZBT26_HUMAN | n/a | 3.27 | 2.00 | n/a | n/a | |||
| GCR_HUMAN | 0.63 | 1.29 | 1.00 | n/a | No Hit | |||
| ZFHX2_HUMAN | -1.94 | 2.72 | 2.00 | n/a | n/a | |||
| CDK9_HUMAN | -0.18 | 1.81 | 1.00 | n/a | n/a | |||
| KLF9_HUMAN | -1.98 | 2.78 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Muscle_Skeletal, Spleen, Stomach, Thyroid, Whole_Blood