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rs158920 chr5:60945441 G>A

Sequence
agtgattgcgaggtcagtaaagga[G/A]ggaaaagtgagagcccctagtcaa
ASB in cell types
CD14+ monocytes GM12878 (female B-cells lymphoblastoid cell line)
ASB for transcription factors
STAT1_HUMAN EP300_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
STAT1_HUMAN 2.91 n/a 1.7·10-31.00 2.00 n/a No Hit
EP300_HUMAN -2.13 2.27 1.000.03 1.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP obesity with early age of onset (age >2)
GTEx eQTL Adrenal_Gland Artery_Aorta Cells_Cultured_fibroblasts Colon_Transverse Esophagus_Mucosa Heart_Atrial_Appendage Muscle_Skeletal Nerve_Tibial Skin_Sun_Exposed_Lower_leg Stomach Thyroid Whole_Blood

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