rs159676 chr19:58155060 A>G
- Sequence
atcccgcagtggtttggggagtgc[A/G]ggtcatcactcccacccgccaagg
- ASB in cell types
- K562 (myelogenous leukemia) HEK293 (embryonic kidney) A549 (lung carcinoma) WA01 (H1, human embryonic stem cells)
- ASB for transcription factors
- GABP1_HUMAN TIF1B_HUMAN RAD21_HUMAN ELF1_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GABP1_HUMAN | n/a | 3.96 | 2.00 | n/a | n/a | |||
| TIF1B_HUMAN | 2.07 | 1.98 | 1.17 | n/a | n/a | |||
| RAD21_HUMAN | 0.37 | 1.37 | 1.40 | n/a | n/a | |||
| ELF1_HUMAN | 0.11 | 2.54 | 1.44 | n/a | No Hit | |||
| ZN341_HUMAN | 2.49 | -3.87 | 1.33 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Frontal_Cortex_BA9, Brain_Nucleus_accumbens_basal_ganglia, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Spleen, Testis, Thyroid