rs159676 chr19:58155060 A>G

Sequence
atcccgcagtggtttggggagtgc[A/G]ggtcatcactcccacccgccaagg
ASB in cell types
K562 (myelogenous leukemia) HEK293 (embryonic kidney) A549 (lung carcinoma) WA01 (H1, human embryonic stem cells)
ASB for transcription factors
GABP1_HUMAN TIF1B_HUMAN RAD21_HUMAN ELF1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
GABP1_HUMAN n/a 3.96 1.003.7·10-15 2.00 n/a n/a
TIF1B_HUMAN 2.07 1.98 7.4·10-51.00 1.17 n/a n/a
RAD21_HUMAN 0.37 1.37 1.001.7·10-3 1.40 n/a n/a
ELF1_HUMAN 0.11 2.54 1.002.2·10-3 1.44 n/a No Hit
ZN341_HUMAN 2.49 -3.87 2.2·10-31.00 1.33 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Tibial,  Brain_Caudate_basal_ganglia,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Brain_Frontal_Cortex_BA9,  Brain_Nucleus_accumbens_basal_ganglia,  Colon_Transverse,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Left_Ventricle,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Spleen,  Testis,  Thyroid

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