rs1628449 chr6:63420430 A>G
- Sequence
aacctcttgcatataccaacacag[A/G]aagtgattaaaggcttgactgtta
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- IKZF2_HUMAN TBX21_HUMAN MTA2_HUMAN TADBP_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| IKZF2_HUMAN | -3.71 | 3.68 | 1.00 | n/a | n/a | |||
| TBX21_HUMAN | n/a | 3.92 | 1.50 | n/a | No Hit | |||
| MTA2_HUMAN | n/a | 3.51 | 1.50 | n/a | n/a | |||
| TADBP_HUMAN | n/a | 3.27 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP ldl cholesterol, ldl cholesterol change with statins, sporadic creutzfeldt-jakob disease, total cholesterol change with statins