rs163104 chr5:55233802 A>C
- Sequence
ggagggggagctgcagcgcgcgcc[A/C]ggcacccgcctttcgcgcctgcgt
- ASB in cell types
- breast tumor MCF7 (Invasive ductal breast carcinoma) Ishikawa (endometrial adenocarcinoma)
- ASB for transcription factors
- ESR1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR1_HUMAN | 1.87 | 3.18 | 1.67 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP aortic valve calcium, body mass index (bmi), ldl cholesterol change with statins, microalbuminuria, refractive error
GTEx eQTL Artery_Aorta, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Mucosa, Minor_Salivary_Gland, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid