rs1633462 chr11:64778785 C>G
- Sequence
tttgttactgcgtgaactgagctc[C/G]gagtccagaaaggaggggatgggg
- ASB in cell types
- K562 (myelogenous leukemia) 22RV1 (prostate carcinoma) primary B-CLL cells GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- HNF4A_HUMAN ANDR_HUMAN VEZF1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| HNF4A_HUMAN | -0.71 | 2.15 | 1.50 | 0.69 | Weak Concordant | |||
| ANDR_HUMAN | 3.03 | n/a | 2.00 | n/a | No Hit | |||
| VEZF1_HUMAN | -0.85 | 1.55 | 2.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adrenal_Gland, Artery_Aorta, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Cells_Cultured_fibroblasts, Esophagus_Gastroesophageal_Junction, Muscle_Skeletal, Nerve_Tibial, Pituitary, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid, Whole_Blood