rs164501 chr5:142013356 G>T
- Sequence
ggggccggggggttttagtgcagg[G/T]gttgagctgggggcaggcaaagca
- ASB in cell types
- 22RV1 (prostate carcinoma) HCT-116 (colon carcinoma) breast tumor xenograft
- ASB for transcription factors
- ANDR_HUMAN FOXA1_HUMAN ZFX_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 2.83 | -1.82 | 2.00 | n/a | No Hit | |||
| FOXA1_HUMAN | -1.02 | 2.08 | 2.00 | n/a | No Hit | |||
| ZFX_HUMAN | 2.12 | -2.27 | 1.00 | n/a | No Hit |
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