rs165056 chr16:66660940 G>A
- Sequence
tgtctccggaatcgcgtctagctg[G/A]ctccctgctctatccctcccgaac
- ASB in cell types
- pancreas SW1990 (Pancreatic adenocarcinoma)
- ASB for transcription factors
- BACH1_HUMAN CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| BACH1_HUMAN | 2.46 | n/a | 2.00 | 1.95 | Weak Discordant | |||
| CTCF_HUMAN | 1.07 | 0.29 | 1.35 | n/a | No Hit |
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Motif analysis
Genetic associations
GRASP age at death with kuru exposure, diastolic blood pressure (dbp), partial epilepsy, sporadic creutzfeldt-jakob disease, total cholesterol, triglycerides
GTEx eQTL Artery_Tibial, Brain_Cortex, Brain_Substantia_nigra, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Lung, Skin_Sun_Exposed_Lower_leg, Spleen, Whole_Blood