rs165188 chr5:139765715 G>C
- Sequence
ggtcgaggggcagcatccaaggcc[G/C]tcttcttacaagggctgaatccga
- ASB in cell types
- K562 (myelogenous leukemia) GM19240 (B cells Lymphoblastoid Cell Lines) SK-N-SH (neuroblastoma) GM18951 (B-cells Lymphoblastoid Cell Lines)
- ASB for transcription factors
- CTCF_HUMAN HTF4_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.59 | 0.74 | 1.26 | n/a | No Hit | |||
| HTF4_HUMAN | n/a | 3.00 | 2.00 | n/a | No Hit |
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