rs1654456 chr19:55063044 G>T
- Sequence
ggtagcggctcatgccgggccggg[G/T]acaggcgtcaggcgtcaggggtcg
- ASB in cell types
- HEK293 (embryonic kidney) BEAS-2B (bronchial epithelium)
- ASB for transcription factors
- GCR_HUMAN ZN335_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GCR_HUMAN | 0.46 | 1.65 | 1.00 | n/a | No Hit | |||
| ZN335_HUMAN | n/a | 1.98 | 2.00 | -4.15 | Discordant |
Items per page:
1 – 2 of 2
Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Whole_Blood