rs165664 chr22:20567052 A>G

Sequence
cccgcacagggtactgctgctgct[A/G]ctggggcaccaagtcgcattccaa
ASB in cell types
MCF10A (breast epithelial cells) BEAS-2B (bronchial epithelium)
ASB for transcription factors
TEAD4_HUMAN GCR_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
TEAD4_HUMAN 3.00 -2.77 1.2·10-71.00 1.00 n/a No Hit
GCR_HUMAN 1.47 0.36 7.7·10-41.00 1.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP chronic kidney disease
GTEx eQTL Adipose_Subcutaneous Adipose_Visceral_Omentum Adrenal_Gland Artery_Aorta Artery_Tibial Brain_Caudate_basal_ganglia Brain_Nucleus_accumbens_basal_ganglia Brain_Putamen_basal_ganglia Breast_Mammary_Tissue Cells_Cultured_fibroblasts Colon_Sigmoid Colon_Transverse Esophagus_Gastroesophageal_Junction Esophagus_Mucosa Esophagus_Muscularis Heart_Atrial_Appendage Heart_Left_Ventricle Liver Lung Muscle_Skeletal Nerve_Tibial Pancreas Pituitary Prostate Skin_Not_Sun_Exposed_Suprapubic Skin_Sun_Exposed_Lower_leg Stomach Testis Thyroid

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