rs1661716 chr17:75571454 T>G
- Sequence
cagcagagcctgctggtctccaga[T/G]gacgtgtctctccctggctggttc
- ASB in cell types
- K562 (myelogenous leukemia) MDM(monocyte derived macrophages) macrophages form periferal blood CD14+ monocytes
- ASB for transcription factors
- E2F1_HUMAN STAT1_HUMAN BRD4_HUMAN CDK8_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| E2F1_HUMAN | 3.69 | n/a | 2.00 | n/a | No Hit | |||
| STAT1_HUMAN | 3.44 | n/a | 3.00 | n/a | No Hit | |||
| BRD4_HUMAN | 0.26 | 1.57 | 1.33 | n/a | n/a | |||
| CDK8_HUMAN | 1.46 | 1.14 | 1.00 | n/a | n/a | |||
| SPI1_HUMAN | 1.46 | 1.85 | 1.49 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP advanced age-related macular degeneration, advanced age-related macular degeneration (choroidal neovascularization) vs. no amd, advanced age-related macular degeneration (geographic atrophy), ldl cholesterol
GTEx eQTL Artery_Tibial, Brain_Amygdala, Breast_Mammary_Tissue, Cells_EBV-transformed_lymphocytes, Pancreas, Whole_Blood