rs1667618 chr2:74120539 T>G
- Sequence
aggcaggcggccctgcaggcgtcg[T/G]cgcgggttcttccggccatcttgt
- ASB in cell types
- primary B-CLL cells liver BEAS-2B (bronchial epithelium) VCaP (prostate carcinoma)
- ASB for transcription factors
- BRD4_HUMAN CTCF_HUMAN GCR_HUMAN ERG_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| BRD4_HUMAN | 2.69 | 0.93 | 1.38 | n/a | n/a | |||
| CTCF_HUMAN | 0.49 | 1.13 | 1.29 | 1.88 | Weak Concordant | |||
| GCR_HUMAN | -0.40 | 1.11 | 1.09 | n/a | No Hit | |||
| ERG_HUMAN | -0.32 | 1.91 | 2.00 | n/a | No Hit | |||
| STAG1_HUMAN | 0.42 | 1.28 | 1.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Brain_Substantia_nigra, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Kidney_Cortex, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Uterus, Vagina, Whole_Blood